PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G225700.1
Common NameB456_006G225700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 388aa    MW: 43771.4 Da    PI: 10.0086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G225700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09194240555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.006G225700.1 194 HSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 240
                         999**********************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17187258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16192258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-9194244No hitNo description
SMARTSM003531.6E-10195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVSSSSAISN AETVLPGYEH NMVIRKLIGR LGNDYNYSSF TSSQPLIKSN NANTPLNIIP  60
KLNLPFSSDP GFSERAPRFS SFNGELGFNR NEFQANIPDS KRGSLLVSEN IPRQNNVNSR  120
KRKSIPSGKA EETPSMAAAD SKIVAGAKRS KKDRADEEHH GNGEKHNKVK SKAAMAPMEY  180
VHVRARRGQA TDGHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ  240
RQVEFLSMKF ATLNPRMDIN MESIVPMDMF RCCGSLPSTM FSIDSSASAF GFGYEHQQRV  300
PMHNGEYDNA ETRFFENSPN SGLRKTRDPI DDLTDANSRV GLFWDDDDLH SIVQMGFGQN  360
QPQSYQGRLW EVKRRWKMWR RTKQCKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486967.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLA0A0D2S0W80.0A0A0D2S0W8_G
STRINGVIT_05s0029g00390.t015e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2442333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-72bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]